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This is by no means a comprehensive list, I am just noting down sites that I have connections with or that I have enjoyed visiting. Please let me know if you would like your site mentioned here (or removed!).
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Ken Taylor Lab, Florida State University
Molecular Contractility, Leeds University
Roger Craig Lab, Uni of Mass Med School, Worcester
Hanspeter Winkler - Protomo Software
Stephen Curry Lab, Imperial College London
Dr Jastrow's Electron Microscope Atlas of Cells, Tissues and Organs
Boston University Histology Learning System
Excellent tutorial - what I recommend to 1st Year Medics
Martin Chaplin: Water Structure and Science
All you want to know about water and how high-pressure freezing works